temperature 300.0 firststep 0 numsteps 200 cellsize 6.5 outputfreq 10 seed 1234 posfile water_423.pos.pdb velfile water_423.vel.pdb psffile water_423.psf parfile water_423.par finXYZPOSFILE water_423.out.fin.pos.xyz finXYZVELFILE water_423.out.fin.vel.xyz DCDFILE water_423.out.trajectory.pos.dcd ALLENERGIESFILE water_423.out.energies cellBasisVector1 28.0 0.0 0.0 cellBasisVector2 0.0 28.0 0.0 cellBasisVector3 0.0 0.0 28.0 cellorigin 0.0 0.0 0.0 boundaryConditions Periodic cellManager Cubic Integrator { level 1 Impulse { cyclelength 5 force Coulomb -algorithm NonbondedSimpleFull -switchingFunction ComplementC1 -cutoff 6.5 } level 0 PLeapfrog { timestep .5 force Bond, Angle force Coulomb -algorithm NonbondedCutoff -switchingFunction C1 -cutoff 6.5 force LennardJones -algorithm NonbondedCutoff -switchingFunction C2 -cutoff 6.5 -switchon 0.1 } }